An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification

Thomas HinzeThomas Hinze, U. HatnikU. Hatnik, Monika SturmMonika Sturm

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Thomas Hinze, U. Hatnik, Monika Sturm
An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification
In N. Jonoska and N.C. Seeman, eds., DNA Computing. Proceedings Seventh International Workshop on DNA-Based Computers (DNA7) Tampa, FL, USA, 2001, volume 2340 of Series Lecture Notes in Computer Science, 2002. Springer

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KurzfassungAbstract
We present a simulation tool for frequently used DNA operations on the molecular level including side effects based on a probabilistic approach. The specification of the considered operations is directly adapted from detailed observations of molecular biological processes in laboratory studies. Bridging the gap between formal models of DNA computing, we use process description methods from biochemistry and show the closeness of the simulation to the reality.
Forschungsgruppe:Research Group: AutomatentheorieAutomata Theory

The final publication is available at Springer.

@inproceedings{ HinzeHatnik+-DNA7-02,
  author = {T. {Hinze} and U. {Hatnik} and M. {Sturm}},
  booktitle = {DNA Computing. Proceedings Seventh International Workshop on DNA-Based Computers (DNA7) Tampa, FL, USA, 2001},
  editor = {N. {Jonoska} and N.C. {Seeman}},
  publisher = {Springer Verlag},
  series = {Series Lecture Notes in Computer Science},
  title = {An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification},
  volume = {2340},
  year = {2002},
}